species:   Rhsol
pid:       PID0462
parent:    Rhi-milR-136
paralog:   
locus:     KB317696.1:2178060-2178149
matures:   ['UGGAAGCAGGUAUUGGAUGAUG', 'UUGCUGGUAUUUGCUCUCAUU']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317696.1:2178060-2178149

8 out of bounds
27 alignments
25 proper strand
23 stranded perfect matches

        *************************   ************************                              
AUGAGCUACAUGGAAGCAGGUAUUGGAUGAUGGUUUACAUUGCUGGUAUUUGCUCUCAUUCCCAAAAAACCCAUAGAUUGGGUGGCCUUU
....(((..((((.((((((((((((.(((((.....))))))))))))))))).)))).........(((((.....))))))))....
----------UGGAAGCAGGUAUUGGAUGAUG---------------------------------------------------------- l=22 a=4 c
---------------------------------------UUGCUGGUAUUUGCUCUCAUU------------------------------ l=21 a=0 c*
----------UGGAAGCAGGUAUUGGAUGAUGG--------------------------------------------------------- l=23 a=15 ma
--------------------------------------AUUGCUGGUAUUUGCUCUCAUU------------------------------ l=22 a=0 ma*

-UGAGCUACAUGGAAGCAGGUAUUGG---------------------------------------------------------------- l=25 a=1 
------UACAUGGAAGCAGGcAUUGGAUG------------------------------------------------------------- l=23 a=1 
----------UGGAAGCAGGUAUUGGAUGAUG---------------------------------------------------------- l=22 a=4 (c)
----------UGGAAGCAGGUAUUGGAUGAUGG--------------------------------------------------------- l=23 a=15 (ma)
----------UGGcAGCAGGUAUUGGAUGAUGG--------------------------------------------------------- l=23 a=1 
----------UGGAAGCAGGUAUUGGAUGAUGGU-------------------------------------------------------- l=24 a=2 
-----------GGAAGCAGGUAUUGGAUGAUG---------------------------------------------------------- l=21 a=1 

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
